During the Appeon Server installation, you can only install Appeon Server to one EAServer instance. However, after the installation, you can manually install Appeon Server to other instances using EAServer Manager:
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Under EAServer Manager, select Servers > server instance (for example, "server2") > Installed Applications, right click it and select Install Application from the popup menu. The Application Wizard launches.
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Click Install an Existing Application.
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On the Install Applications dialog, select "AppeonServer" and click OK.